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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term ORC4:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000115947	ORC4	0	0	10	ENSG00000115947	ENST00000490200		origin recognition complex, subunit 4 [Source:HGNC Symbol;Acc:8490]	2	148687968	148779147	-1	q23.1	148710041	148778332	ORC4	ORC4-004	HGNC Symbol	HGNC transcript name	18	36.14	protein_coding	processed_transcript	ensembl_hava	havana	KNOWN	KNOWN	5000	8490	ORC4		27508

MSeqDR Master Exome Data Set M1: 245 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	2	148692200	A	C	ENST00000264169	ENSG00000115947	148687968	148779147	ENSP00000264169	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
2	2	148692200	A	C	ENST00000392857	ENSG00000115947	148687968	148779147	ENSP00000376597	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
3	2	148692200	A	C	ENST00000392858	ENSG00000115947	148687968	148779147	ENSP00000376598	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
4	2	148692200	A	C	ENST00000535373	ENSG00000115947	148687968	148779147	ENSP00000441953	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
5	2	148692200	A	C	ENST00000536575	ENSG00000115947	148687968	148779147	ENSP00000441502	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
6	2	148692200	A	C	ENST00000540442	ENSG00000115947	148687968	148779147	ENSP00000438326	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
7	2	148692233	A	G	ENST00000264169	ENSG00000115947	148687968	148779147	ENSP00000264169	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	rs17225677	0.00363	-	-	-	-	-	het	4
8	2	148692233	A	G	ENST00000392857	ENSG00000115947	148687968	148779147	ENSP00000376597	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	rs17225677	0.00363	-	-	-	-	-	het	4
9	2	148692233	A	G	ENST00000392858	ENSG00000115947	148687968	148779147	ENSP00000376598	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	rs17225677	0.00363	-	-	-	-	-	het	4
10	2	148692233	A	G	ENST00000535373	ENSG00000115947	148687968	148779147	ENSP00000441953	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	rs17225677	0.00363	-	-	-	-	-	het	4
11	2	148692233	A	G	ENST00000536575	ENSG00000115947	148687968	148779147	ENSP00000441502	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	rs17225677	0.00363	-	-	-	-	-	het	4
12	2	148692233	A	G	ENST00000540442	ENSG00000115947	148687968	148779147	ENSP00000438326	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	rs17225677	0.00363	-	-	-	-	-	het	4
13	2	148692601	T	-CTG	ENST00000264169	ENSG00000115947	148687968	148779147	ENSP00000264169	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
14	2	148692601	T	-CTG	ENST00000392857	ENSG00000115947	148687968	148779147	ENSP00000376597	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
15	2	148692601	T	-CTG	ENST00000392858	ENSG00000115947	148687968	148779147	ENSP00000376598	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
16	2	148692601	T	-CTG	ENST00000535373	ENSG00000115947	148687968	148779147	ENSP00000441953	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
17	2	148692601	T	-CTG	ENST00000536575	ENSG00000115947	148687968	148779147	ENSP00000441502	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
18	2	148692601	T	-CTG	ENST00000540442	ENSG00000115947	148687968	148779147	ENSP00000438326	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
19	2	148692776	T	C	ENST00000264169	ENSG00000115947	148687968	148779147	ENSP00000264169	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	rs3768686	0.28741	-	-	-	-	-	het	241
20	2	148692776	T	C	ENST00000264169	ENSG00000115947	148687968	148779147	ENSP00000264169	ORC4	-1	ORC4_HUMAN	-	-	3'_UTR	rs3768686	0.28741	-	-	-	-	-	hom	63

** A friendly reminder: guest user can access up to first 20 entries per gene from MSeqDR Master Exome Data Set M1. To gain access to the full power of MSeqDR, please login, or register, then request access to data.

As MSeqDR registered user , your accessible protected data set after login:

Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding ORC4 2:148687968..148779147 region Gbrowse